PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006553-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 544aa    MW: 62687 Da    PI: 10.7858
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006553-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-1815107199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    ffkv++p+ + +  rl++p  f+++++g+  +s t+ l+ +sg+ W+v+l  +k++++ ++++GW+ F k++  k gDf+vF+++g  +f++ v++
  NNU_006553-RA  15 FFKVFLPKPNINPERLRIPFGFLKHIKGE--GSGTVWLRGPSGNMWRVNL--TKNPDGWFFEDGWEVFLKDHISKPGDFFVFRYIG--NFHFSVQI 104
                    99*********************888877..777****************..********************************99..56669999 PP

                    E-S CS
             B3  97 frk 99 
                    f+ 
  NNU_006553-RA 105 FDP 107
                    985 PP

2B351.91.4e-16266356198
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    f+   + s+v++s+ l++p +fa++h  + ++ +  +l++ s  sW v l  + +++r ++++GW +Fv++n ++ gD+++F+l+g  e+e++v+v
  NNU_006553-RA 266 FVRCIKASNVGRSSHLSIPGDFAKTHL-P-RRRTNAILRN-SQGSWIVGL--DLGRERSTIRAGWINFVRDNMIRKGDTCIFELVG--EREMRVHV 354
                    56677899***************9994.3.3445677777.6669*****..9999999************************998..56678998 PP

                    E- CS
             B3  97 fr 98 
                    f 
  NNU_006553-RA 355 FH 356
                    85 PP

3B352.31e-164645401798
                    E--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
             B3  17 vlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +p+ f +eh  g+   +++++ l + +grsWe++l    ++++y +++GW +Fv+ n+++ gD++ F+l+g+  + ++v++fr
  NNU_006553-RA 464 HIPNYFSKEHfrGY--GKNMKILLHN-RGRSWEMNL--LVSRRQYSISRGWASFVRHNNIQKGDICAFELVGK--TDMRVRIFR 540
                    69999*****7643..3566676555.9********..99999***************************985..445999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-2210110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-2211113IPR015300DNA-binding pseudobarrel domain
CDDcd100172.24E-1813106No hitNo description
PfamPF023621.1E-1615106IPR003340B3 DNA binding domain
PROSITE profilePS5086313.6915108IPR003340B3 DNA binding domain
SMARTSM010193.2E-1215108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.7E-23258356IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-20259356IPR015300DNA-binding pseudobarrel domain
CDDcd100176.75E-16264355No hitNo description
PfamPF023622.0E-13266356IPR003340B3 DNA binding domain
SMARTSM010196.2E-15266358IPR003340B3 DNA binding domain
PROSITE profilePS5086314.198266358IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-21432541IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-18434541IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.4E-11454542IPR003340B3 DNA binding domain
PfamPF023625.0E-15464540IPR003340B3 DNA binding domain
PROSITE profilePS5086313.535465542IPR003340B3 DNA binding domain
CDDcd100172.91E-13465540No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MARSNRFCSG RHPCFFKVFL PKPNINPERL RIPFGFLKHI KGEGSGTVWL RGPSGNMWRV  60
NLTKNPDGWF FEDGWEVFLK DHISKPGDFF VFRYIGNFHF SVQIFDPTAC EKEASFRVKC  120
SQENNAFVEP QGNKRGREII AEALKPSPLK PFEIALKRKR VNPPQVHLER RTRNGAHKVN  180
IVSNRGRGGQ DAVSTKADKD STLPCQIKER DKHLSLRSSR HVKIEMGPVT RGRKKISDLP  240
IHETVSDTGG CCTRKAVESS SKFPYFVRCI KASNVGRSSH LSIPGDFAKT HLPRRRTNAI  300
LRNSQGSWIV GLDLGRERST IRAGWINFVR DNMIRKGDTC IFELVGEREM RVHVFHERRI  360
QSISSKSPVS SVCPCWSEAC EADPSIDLVS HEKAKIENAH LPIDEMDSHT RGCLSKGQMR  420
TEGRERVRRT AQSFTSDFPY FKWCMREYNV GGRRLILINW SMQHIPNYFS KEHFRGYGKN  480
MKILLHNRGR SWEMNLLVSR RQYSISRGWA SFVRHNNIQK GDICAFELVG KTDMRVRIFR  540
VDKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255065.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-20B3 family protein